research-resource

Purpose

Use this skill to place an Experiment on a compute resource that the user has already defined. The resource registry and allocation lifecycle are management state. Availability probes are short-lived observations. Resource policy is part of the user's mutable working state. Under User-First Reconcile-After, execution and terminal Evidence come before any advisory placement reconciliation.

The harness recommends, the agent decides, and the user defines which servers exist.

Storage and authority

Resolve the managed root once:

export RESEARCH_ROOT="${RESEARCH_ROOT:-.research}"

With the default root, persistent management data is in .research/state/, Run evidence is in .research/experiments/, and human views are in .research/interface/.

Data	Location	Meaning
Resource registry	Resource aggregates in $RESEARCH_ROOT/state/research.sqlite3 through bounded queries	Persistent authority
Allocation lifecycle	ResourceAllocation aggregates in the same database	Persistent occupancy authority
Folded current state	$RESEARCH_ROOT/state/current.json	Rebuildable projection
Availability snapshots	$XDG_RUNTIME_DIR/trustworthy-research/<workspace-hash>/resource_snapshots/	Short-lived local projection
Human resource views	$RESEARCH_ROOT/interface/	Read-only generated projection

When XDG_RUNTIME_DIR is unset, ResearchPaths selects a per-user temporary fallback. Snapshots do not belong in $RESEARCH_ROOT/state/, and they do not survive as allocation facts.

Never edit research.sqlite3, events.jsonl, current.json, or interface files. The CLI validates a command and commits it through the state writer.

Authority boundary

• The user names each server and confirms its connection and capacity fields.
• lib.resource_alloc validates, measures, ranks, and records. It does not launch a command or drive a remote session.
• The server's execution skill owns remote connection, scheduler submission, and job verification.
• An open ResourceAllocation aggregate reserves capacity. Conversational memory does not.
• A missing or stale snapshot means availability is unknown. It never means free.
• A reconciliation suggestion cannot allocate, overbook, rebind, or release an allocation. Only the validated allocation lifecycle can change occupancy.

Commands

All commands accept --research-root; the RESEARCH_ROOT environment variable is the default.

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" register
python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" list

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  snapshot --server <name> --probe

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  snapshot --server <name> --from-nvidia-smi <file>

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  recommend --pkg <package> --exp <experiment> --gpu-count 1

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  allocate --server <name> --pkg <package> --exp <experiment> \
  --gpu-count 1 --reason "<reason>"

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  link --alloc <allocation-id> --run-id <run-id>

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  release --alloc <allocation-id> --outcome <terminal-status>

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" status

Every mutation rejects before its event is appended. Unknown resources, stale allocation ids, overbooking, and double release return an error without changing state.

Register a resource

Ask for the typed fields that affect placement:

• name;
• kind: local, ssh, or slurm;
• control: direct access or an existing tmux gateway;
• declared GPU type, count, and memory;
• scheduler account, partitions, and maximum duration when applicable;
• stable execution presets exposed during Package review;
• working directory and environment;
• data-locality and capability tags;
• the execution skill that owns remote work.

Use notes only for details that do not affect ranking. Promote a recurring decision input to a typed field.

Example:

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" register <<'EOF'
{"name":"local","kind":"local",
 "gpus":[{"type":"a6000","count":2,"mem_gb":48}],
 "presets":[{"id":"local","label":"Local","mode":"direct"}],
 "tags":["dataset-local"]}
EOF

See registry schema for the full record.

For Bunya, register one physical slurm Resource with both bunya-sbatch and bunya-interactive presets. Do not register two physical Resources for the same cluster. Interactive mode first reuses a valid existing allocation and requests one only when none exists.

Record Package placement

Before the initial Package bootstrap, or when the user adds an Experiment, show the active preset range and confirm one ordered preset list and capacity profile chain for every selected Experiment. If the user already gave the exact choices, use them without reopening the decision.

Store the result in Package.resourcePolicy, not Experiment.spec. Every profile carries its own config_ref, GPU type and count, per-GPU memory, host RAM, and minimum duration. Create the referenced config before activation. Omitted presets and profiles are forbidden fallbacks.

Package.resourcePolicy is current user-owned working state. A later change uses the typed Package plan transaction and versions the policy without rewriting a frozen Run or finalized Evidence. Activation is only the initial bootstrap path; old phase, readiness, reopen, and Scope gates do not decide placement.

Keep these three facts separate:

• the Resource registry defines stable servers, presets, and scheduler maps;
• Package.resourcePolicy defines the reviewed per-Experiment allowlist and fallback order;
• probes, queue state, and the chosen allocation are run-time observations.

At run time, reuse a compatible open interactive allocation first. If none exists, request the first reviewed profile. When Slurm rejects that request, inspect the live partition, QoS, GRES, memory, and duration constraint, then try only the next reviewed profile or preset. Stop when the allowlist is exhausted; never invent a hardware downgrade.

Probe before placement

For the local machine:

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  snapshot --server local --probe

For a remote resource, collect this command through the resource's execution skill:

nvidia-smi --query-gpu=index,memory.used,memory.total,utilization.gpu \
  --format=csv,noheader,nounits

Save the output locally, then normalize it with --from-nvidia-smi. Do not create an extra remote connection when the registered control path requires an existing tmux gateway.

A snapshot expires after 600 seconds. Recommendation may still include an unprobed resource, but its availability is unknown and ranks below confirmed idle capacity.

Recommend and allocate

Build the requirement from the selected Experiment:

• gpu_count;
• optional gpu_type and min_mem_gb;
• min_hours from the expected-duration class;
• required data-locality tags.

recommend returns candidates and blocked reasons. Ranking prefers confirmed free capacity, then lower start latency, then the smallest sufficient memory class.

Allocate only after choosing a candidate:

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  allocate --server local --pkg <package> --exp <experiment> \
  --gpu-count 1 --gpu-ids 0 --reason "evaluation"

Keep the returned alloc_id.

For a local canonical Run:

CUDA_VISIBLE_DEVICES=0 python3 -m lib.experiments.launch \
  --workspace . \
  --research-root "$RESEARCH_ROOT" \
  --pkg <package> \
  --exp <experiment> \
  --server local \
  --alloc <allocation-id> \
  --tmux-session <name> \
  -- bash scripts/run_experiment.sh

The launcher verifies the open allocation and binds the authorized Run. For a remote job, launch through the registered execution skill, then bind the scheduler job id:

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  link --alloc <allocation-id> --job-id <job-id>

Manual --run-id linking accepts only an existing open Run that was authorized for the same allocation, Package, and Experiment. It cannot attach an allocation to an unrelated or invented Run id.

If the human interface needs a resource summary, record the state-backed package observation through research-op. Do not write a tracker page or interface data file.

After a Run, reconcile only the observed allocation and callback facts. A proposed policy change waits for explicit user acceptance and cannot change the allocation that was bound to the completed Run.

Release

Release capacity only after terminal evidence is verified and the allocation still belongs to the same Package and Experiment:

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" \
  release --alloc <allocation-id> --outcome COMPLETED

Accepted canonical terminal outcomes include COMPLETED, FAILED, HALTED, and SKIPPED. Resource release is separate from the user's terminal Package decision, and an advisory reconciliation cannot substitute for either the verified evidence or that decision.

Before ending the session:

python3 lib/resource_alloc/cli.py --research-root "$RESEARCH_ROOT" status

A linked Run that is terminal while its allocation remains open is a leak. Release it or record the specific blocker.

Failure routing

• Capacity rejection: run recommend again. Do not edit state to free a GPU.
• Stale snapshot: probe again before claiming confirmed availability.
• Changed hardware or scheduler policy: ask the user to confirm an updated Resource record.
• Remote submission failure: keep the allocation open while a bounded retry is justified, or release it with the verified outcome.

References

• registry schema
• worked example